Cliniko vs Deputy: Side-by-Side Feature & Pricing Comparison
An honest comparison of Cliniko and Deputy for Australian mid-market Australian businesses. See feature ratings, pricing, pros and cons to make the right choice — or let our Harvard-educated experts help you decide.
Feature Comparison
Side-by-side feature ratings for Cliniko and Deputy.
| Feature | Cliniko | Deputy | Notes |
|---|---|---|---|
| Industry fit | Cliniko and Deputy are evenly matched on industry fit, so your choice here comes down to preference and workflow fit. | ||
| Job management | Cliniko significantly outperforms Deputy on job management, making it the stronger choice for businesses that prioritise this area. | ||
| Quoting and invoicing | Cliniko significantly outperforms Deputy on quoting and invoicing, making it the stronger choice for businesses that prioritise this area. | ||
| Scheduling and dispatch | In terms of scheduling and dispatch, Cliniko and Deputy perform at a similar level, which is common for mature platforms in this space. | ||
| Mobile field access | Deputy has a notable advantage in mobile field access. | ||
| Compliance features | Deputy significantly outperforms Cliniko on compliance features, making it the stronger choice for businesses that prioritise this area. | ||
| Invoicing | For invoicing, both platforms deliver a similar experience — neither has a clear advantage. | ||
| Expense tracking | Cliniko and Deputy are evenly matched on expense tracking, so your choice here comes down to preference and workflow fit. | ||
| Bank reconciliation | Cliniko and Deputy are evenly matched on bank reconciliation, so your choice here comes down to preference and workflow fit. | ||
| Payroll | Cliniko and Deputy are evenly matched on payroll, so your choice here comes down to preference and workflow fit. | ||
| Tax reporting and BAS | Both Cliniko and Deputy offer comparable tax reporting and bas capabilities. | ||
| Multi-currency support | Both Cliniko and Deputy offer comparable multi-currency support capabilities. |
Industry fit
Cliniko
Deputy
Cliniko and Deputy are evenly matched on industry fit, so your choice here comes down to preference and workflow fit.
Job management
Cliniko
Deputy
Cliniko significantly outperforms Deputy on job management, making it the stronger choice for businesses that prioritise this area.
Quoting and invoicing
Cliniko
Deputy
Cliniko significantly outperforms Deputy on quoting and invoicing, making it the stronger choice for businesses that prioritise this area.
Scheduling and dispatch
Cliniko
Deputy
In terms of scheduling and dispatch, Cliniko and Deputy perform at a similar level, which is common for mature platforms in this space.
Mobile field access
Cliniko
Deputy
Deputy has a notable advantage in mobile field access.
Compliance features
Cliniko
Deputy
Deputy significantly outperforms Cliniko on compliance features, making it the stronger choice for businesses that prioritise this area.
Invoicing
Cliniko
Deputy
For invoicing, both platforms deliver a similar experience — neither has a clear advantage.
Expense tracking
Cliniko
Deputy
Cliniko and Deputy are evenly matched on expense tracking, so your choice here comes down to preference and workflow fit.
Bank reconciliation
Cliniko
Deputy
Cliniko and Deputy are evenly matched on bank reconciliation, so your choice here comes down to preference and workflow fit.
Payroll
Cliniko
Deputy
Cliniko and Deputy are evenly matched on payroll, so your choice here comes down to preference and workflow fit.
Tax reporting and BAS
Cliniko
Deputy
Both Cliniko and Deputy offer comparable tax reporting and bas capabilities.
Multi-currency support
Cliniko
Deputy
Both Cliniko and Deputy offer comparable multi-currency support capabilities.
Pricing Comparison
General pricing information for each platform.
Cliniko
From ~$45/month
Pricing may vary based on team size, features, and region. Contact the vendor for the latest Australian pricing.
Deputy
From ~$6/user/month
These figures are estimates based on publicly available pricing. Actual costs depend on your usage, team size, and any negotiated rates.
Pros & Cons
An honest look at the strengths and limitations of each platform.
Cliniko
Pros
- Mobile-friendly interface
- Rich data model covering patients, appointments, invoices and more
- Strong fit for Healthcare & Allied Health workflows
- Active user community and resources
- Purpose-built for industry-specific needs
Cons
- May be too specialised for diverse businesses
- Large ecosystem can make choosing the right integrations overwhelming
- Smaller development team than general tools
- Onboarding documentation could be more comprehensive
Deputy
Pros
- Regular platform updates and improvements
- Extensive integration ecosystem with 30+ connectors
- Australian tax compliance built in
- Streamlines BAS and financial reporting
- Solid feature set for its price point
Cons
- Add-on costs for advanced features
- Bank feed reliability varies by institution
- May not suit every workflow without customisation
- Support response times vary by plan tier
Best For
Which tool suits which use case.
Choose Cliniko if you need
- ✓ Healthcare & Allied Health businesses
- ✓ Field service operations
- ✓ Moderate data needs (patients, appointments)
- ✓ Teams needing extensive third-party integrations
- ✓ Specialised compliance
Choose Deputy if you need
- ✓ Teams needing extensive third-party integrations
- ✓ Real-time data sync across platforms
- ✓ Financial reporting
- ✓ Hospitality & Tourism businesses
- ✓ Moderate data needs (employees, shifts)
Expert Verdict
Our Harvard-educated consultants' take on this comparison.
Clever Ops Recommendation
Cliniko and Deputy serve different purposes — Cliniko focuses on industry tools, while Deputy excels in accounting & finance. Many mid-market Australian businesses use both platforms together. Clever Ops can help you decide whether you need one or both, and build integrations between them so data flows automatically. Our Harvard-educated consultants have helped 50+ businesses optimise their tech stacks.
Migration Notes
What to know about switching between Cliniko and Deputy.
Migrating Between Cliniko and Deputy
A successful migration from Cliniko to Deputy (or vice versa) is not just about data — it is about your team. Clever Ops handles the technical migration of your core data and custom fields, but we also provide hands-on training so your team is confident on the new platform from day one. The full process, including training, typically takes 4-8 weeks.
Cliniko vs Deputy FAQ
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