Cliniko vs Square

Cliniko vs Square: Side-by-Side Feature & Pricing Comparison

Our Harvard-educated consultants have implemented both Cliniko and Square for Australian businesses. Here is what 12+ of experience has taught us about choosing between them.

12
Features compared
50+
Clients advised
98%
Client retention
12+
Years experience

Feature Comparison

Side-by-side feature ratings for Cliniko and Square.

Industry fit

Cliniko

Square

When it comes to industry fit, Cliniko pulls clearly ahead of Square — a factor worth weighing if this capability is important to your team.

Job management

Cliniko

Square

Both Cliniko and Square offer comparable job management capabilities.

Quoting and invoicing

Cliniko

Square

Both Cliniko and Square offer comparable quoting and invoicing capabilities.

Scheduling and dispatch

Cliniko

Square

When it comes to scheduling and dispatch, Square pulls clearly ahead of Cliniko — a factor worth weighing if this capability is important to your team.

Mobile field access

Cliniko

Square

Square significantly outperforms Cliniko on mobile field access, making it the stronger choice for businesses that prioritise this area.

Compliance features

Cliniko

Square

Square has a notable advantage in compliance features.

Transaction fees

Cliniko

Square

When it comes to transaction fees, Cliniko pulls clearly ahead of Square — a factor worth weighing if this capability is important to your team.

Payment methods supported

Cliniko

Square

Both Cliniko and Square offer comparable payment methods supported capabilities.

Recurring billing

Cliniko

Square

Cliniko significantly outperforms Square on recurring billing, making it the stronger choice for businesses that prioritise this area.

International payments

Cliniko

Square

For Healthcare & Allied Health that rely on strong international payments, Cliniko is the more capable option in our assessment.

Fraud protection

Cliniko

Square

When it comes to fraud protection, Square pulls clearly ahead of Cliniko — a factor worth weighing if this capability is important to your team.

Developer tools and API

Cliniko

Square

Cliniko has a notable advantage in developer tools and api.

Pricing Comparison

General pricing information for each platform.

Cliniko

From ~$45/month

Pricing is indicative only and subject to change. We recommend contacting the vendor for a tailored quote based on your Australian business needs.

Square

Transaction-based; ~2.6% + 10c per transaction

These figures are estimates based on publicly available pricing. Actual costs depend on your usage, team size, and any negotiated rates.

Pros & Cons

An honest look at the strengths and limitations of each platform.

Cliniko

Pros

  • Mobile-friendly interface
  • Rich data model covering patients, appointments, invoices and more
  • Strong fit for Healthcare & Allied Health workflows
  • Active user community and resources
  • Purpose-built for industry-specific needs

Cons

  • May be too specialised for diverse businesses
  • Large ecosystem can make choosing the right integrations overwhelming
  • Smaller development team than general tools
  • Onboarding documentation could be more comprehensive

Square

Pros

  • Regular platform updates and improvements
  • Extensive integration ecosystem with 30+ connectors
  • Popular across Retail & E-commerce, Hospitality & Tourism, Healthcare & Allied Health
  • Cloud-based with reliable uptime
  • Rich data model covering payments, orders, customers and more

Cons

  • Transaction fees vary by volume
  • Onboarding documentation could be more comprehensive
  • Support response times vary by plan tier
  • Complex data model may require expert configuration

Best For

Which tool suits which use case.

Choose Cliniko if you need

  • Healthcare & Allied Health businesses
  • Field service operations
  • Moderate data needs (patients, appointments)
  • Teams needing extensive third-party integrations
  • Specialised compliance

Choose Square if you need

  • Recurring billing
  • Teams needing extensive third-party integrations
  • Transaction management
  • Complex data models (payments, orders, customers and more)
  • Real-time data sync across platforms

Expert Verdict

Our Harvard-educated consultants' take on this comparison.

Clever Ops Recommendation

Comparing Cliniko and Square is a bit like comparing apples and oranges — they solve different problems. Cliniko handles your industry tools needs, while Square covers payments. The value of this comparison lies in understanding how they work together. Clever Ops specialises in connecting these kinds of complementary tools for mid-market Australian businesses.

Migration Notes

What to know about switching between Cliniko and Square.

Migrating Between Cliniko and Square

A successful migration from Cliniko to Square (or vice versa) is not just about data — it is about your team. Clever Ops handles the technical migration of your core data and custom fields, but we also provide hands-on training so your team is confident on the new platform from day one. The full process, including training, typically takes 4-8 weeks.

Cliniko vs Square FAQ

Connect These Tools

Already decided? See how to integrate Cliniko and Square seamlessly.

Need Help Choosing?

Join 50+ Australian businesses that trust Clever Ops for objective, vendor-neutral technology advice.